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pysam

github · Downloads 45.5K · Heat 51.7

Source & License

Author： K-Dense-AI
License： MIT License

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Introduction

Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.

Resource Information

Author：K-Dense-AI
Category：Rag Knowledge
Language：en
Auth： No auth
License：MIT
Pricing： Marked free
Publisher：K-Dense-AI

License information is collected from official sources and may be outdated or missing. Refer to the LICENSE file in the original repository before commercial use.

Tags
知识库 RAG / pysam

Features

  • Overview
  • First Decide
  • Bundled Scripts
  • Coordinate Contract
  • Alignment Files
  • Variant Files
  • FASTA, FASTQ, and Tabix
  • CRAM, Remote I/O, and Threads
Use cases
AlignmentFile and AlignedSegment for SAM/BAM/CRAMVariantFile, VariantHeader, and VariantRecord for VCF/BCFFastaFile for indexed FASTA and FastxFile for sequential FASTA/FASTQTabixFile for BGZF-compressed, tabix-indexed BED/GFF/GTF/custom tablespysam.samtools and pysam.bcftools for wrapped command dispatchersfetch() returns placed alignment records overlapping a region; even an

Supported platforms

Claude Code
Official source → Documentation

Information boundary

Information on this page is collected from official documents for technical presentation only and does not imply our endorsement. Pricing, quotas and availability are subject to the latest official statements. We make no commitment regarding any action you take after leaving this site.

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